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Published 20 hours ago • verified publisher icon hillerlab

Fragmented genomes

Open giovannaVeiga opened this issue 1 year ago • 3 comments

Hi everyone,

Do you think I can run make lastz chains in fragmented genomes? One has 757 scaffolds and the other has 60,750. I already used RAGTAG to improve the assembly and they are already masked. I am using a 32 CPU server to run the analysis and I am planning to run TOGA too.

Thanks in advance

giovannaVeiga avatar Nov 08 '23 12:11 giovannaVeiga