The certainty of uncertain states in TOGA

[molinfzlvvv]

Hi, authors

I have determined the specific loss of the query species through the "L" gene set, but I cannot determine the ancestor node status because the other species are uncertain(PI / UL / M). In this case, how do I determine the authenticity of the gene loss. In other words, how do I properly recognize and deal with these uncertain states.

As shown in the picture. Looking forword to your reply.