lotus2 icon indicating copy to clipboard operation
lotus2 copied to clipboard

Published 20 hours ago • verified publisher icon hildebra

Using lotus2 with input ASVs

Open Amanda-Biocortex opened this issue 6 months ago • 5 comments

Hi,

I have ASVs across a set of samples- can I run these through lotus 2 lambda using the taxOnly flag?

My guess is I need to create a fasta from the ASVs but then I wont have any quality scores because they are ASVs instead of reads. Can I run these through taxonomy assignment without quality scores?

How would you recommend proceeding?

Many thanks, Amanda

Amanda-Biocortex avatar Aug 01 '24 09:08 Amanda-Biocortex