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Published 20 hours ago • verified publisher icon hildebra

reference DB when using RDPclassifier

Open CFox-Lin opened this issue 11 months ago • 1 comments

Hi, If I run lotuS2 with -taxAligner 0, the option -taxAligner seems to be ignored. Am I right? From the logs, it appears that the RDP database was used: [cmd] java -Xmx1g -jar /home/lin/lotus2-master//bin/rdp_classifier_2.12/dist/classifier.jar classify -f fixrank -g 16srrna -h ./lotusOut/hierachy_cnt.tax -q ./lotusOut/OTU.fna -o ./lotusOut/tmpFiles//RDPotus.tax -c 0.1

CFox-Lin avatar Mar 08 '24 02:03 CFox-Lin

Hi, If -taxAligner is set to 0, the RDP classifier option will be used.

Best, Ezgi

ozkurt avatar Mar 08 '24 10:03 ozkurt