Hannah Holland-Moritz

Thank you, that is super helpful! I will go ahead and try it. -- Hannah Holland-Moritz Doctoral Candidate, Fierer Lab EBIO Department University of Colorado Boulder she/her pronouns [email protected] http://apipetteandanopenmind.wordpress.com/...

@jgrembi Interesting! An Illumina rep, gave me the 2, 12, 23, and 37 bins, so I just assumed that that would be the standard across all sequencing centers. Good to...

Yes, it worked great! That's what we used to get the results that demonstrated there was little difference (except in rare taxa) between our simulated NovaSeq data and our original...

We ended up just using 1e8 (our default), and incorporating the changes that @benjjneb suggested after the learnErrors step. At one point we did try running it for 1e9 but...

Here is a snippet of some code that I used when I was trying to run a comparison on Miseq data and simulated NovaSeq data that I created by converting...

Hi All! Just rejoining this conversation after a long hiatus. First @JacobRPrice thank you for all the work you've been doing on this. It's extremely helpful. I will go ahead...

So time to report back. Like @JacobRPrice I ran the three options, but I also added a 4th trial based on @jonalim's method. The samples are from arctic soils so...

I am also having a similar issue on a cluster. It seems to run successfully for some but not all samples. I'm trying to re-run some samples now to see...

Thanks for your work on this! It's a wonderful tool. Just popping by to say that I had this error as well. In my case, I solved it by removing...

Hi, I'm getting the same error as Min-Soo after trying the steps above. The only difference is I don't have admin privileges so all of my commands are run without...