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Published 20 hours ago • verified publisher icon hhg7

annotation files

Open jeffinrockey opened this issue 7 years ago • 1 comments

Dear David,

Could you please let me know what are the acceptable annotation formats usable with -a option. I gave a gff and later a gtf. Both of them were not recognized.?

Regards, Jeffin

jeffinrockey avatar May 28 '18 12:05 jeffinrockey

hi Jeffin,

thanks for letting me know.

where have you downloaded the GTF? The GTF I downloaded from refFlat on http://hgdownload.cse.ucsc.edu/goldenPath/mm10/database/ and also gencode formats.

Please send me the GTF (or link where I can download) and I can debug.

-Dave

hhg7 avatar May 28 '18 16:05 hhg7