densvis

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Dear densmap tool, Any plan for further supporting the newest version of Numba? There are known issues for Numba when running on ARM64/aarch64 CPU structure. Both umap and trimap are...

jianshu93

Can densMAP (in development version of Seurat) yield reproducible clustering?

3

I"m running densMAP in the development version of Seurat, and it seems to work (hallelujah!) but the clustering is not reproducible. If I run the same pipeline twice over, the...

NicolaasVanRenne

prediction on out of sample

1

Hi, I'm trying to fit the model on a dataset with `densmap.fit()` and then to evaluate the embedding on a new dataset with different number of rows with `densmap.transform()` but...

AleBitetto

How can I get the cluster information of cells after densvis processing?

1

I'm wondering whether the cluster information of cells be changed after densvis processing,in other words,how can I get that ? The mapping of colors is required when drawing.

xujingmei111

I have an issue installing densvis (and the parent package scater) on M1 apple silicon. It appears another user has an identical issue, so Id don't see the need to...

Conorisco