hetionet

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Provenance for some CbP relationships is lost during condense() operation

3

I'm going through metadata in the compound-binds-gene relationships, and taking a specific look at the `actions` lists. In many examples, there are several actions, such as with [drugbank:DB00502](https://www.drugbank.ca/drugs/DB00502) binds [ncbigene:1813](https://www.ncbi.nlm.nih.gov/gene/1813)....

cthoyt

Make implied directed edges explicit

1

We talked about this a while ago. I feel that edges that can only be in one direction should be explicitly shown to be directional, like `compound -> side effect`:...

vincerubinetti

Convert permutation hetnet to networkx

3

Any easy way to convert permutation graph of hetnet to networkx

lingling93

Inquiry about metapaths from 2017 Paper "Systematic Integration of Biomedical Knowledge Prioritizes Drugs for Repurposing"

7

Hi, I am a postgraduate studying in the domain adaptation of pre-trained language models. I've been following your work in the realm of biomedical data integration. I was particularly intrigued...

ferry309

Speeding up data import to Neo4j v5 and CSV format data

2

I encountered challenges while trying to load Hetionet data into my updated MacBook's Neo4j version 5.13. The existing Neo4j dumps were no longer compatible, and directly importing the data in...

nickzren

Do any relations imply another relation?

1

Do any of the relations in Hetionet imply the existence of another relation (that isn't the reverse relation)? For instance, there is a Disease - upregulates - Gene edge and...

ejin700

Hetionet Browser is down

4

When trying to connect to: https://neo4j.het.io/browser/ I get the following message:  Which is new, I've been querying it for several days now...

Travis-Barton