Unable to get gene-gene and disease-gene edges

[Tabatabaei1999]

Hello,

I would like to download the gene-gene and disease-gene edges(from https://neo4j.het.io/browser/). However, when I attempt to click on them, the website breaks after some time. Could you please advise me on how to download them successfully?

Thank you.

[dhimmel]

Hmm, this Cypher query finds all 27,977 gene-gene edges and just took 340 milliseconds for me to run at https://neo4j.het.io/browser/, so something is going wrong for you:

MATCH (gene:Gene)-[rel]-(disease:Disease)
RETURN
  gene.identifier AS gene_id,
  gene.name AS gene_name,
  disease.identifier AS disease_id,
  disease.name AS disease_name,
  type(rel) AS rel_type
ORDER BY gene_id DESC

There are also several formats of bulk downloads available for Hetionet. The TSV or JSON formats would allow you to easily extract all gene-gene and disease-gene edges.