Armand Collin

> Add a "% probability" or severity that an axon is taken at an oblique cut (myelin thickness on minor axis divided by myelin thickness on major axis) Related to...

@Stoyan-I-A you are right, it might not be trivial to implement. I was thinking of performing something like a flood fill inside the concave hull of the axonmyelin region: ...

> Ideally, we'd only calculate the perimeter for axons without "holes" in them; axons with holes in them should be flagged in the quality assurance step, and leave it up...

@mathieuboudreau yes but if they want to keep the holes (e.g. for myelin area) AND compute the perimeters correctly (e.g. only the outermost perimeter) they won't have an option to...

This issue can also creep in when there are small holes between the axon and myelin, which is unfortunately pretty common in practice. When the axon and myelin regions are...

@lgazdzin Hi Lisa, sorry for the late reply - I was pretty swamped and this issue is a bit technical so I really had to re-discover everything again :sweat_smile: In...

For future reference, this project is almost complete. More details on this repo: www.github.com/axondeepseg/model_seg_nerve

Update: our collaborator provided a lot of manual measurements so we will be able to accurately evaluate our method.

@mathieuboudreau ok I can take care of Osvaldo and Ananya. As for Brad, I'm not sure he used ADS but I'll be sure to mention it when we meet him...

I sent the request to professor Delbono. As for Ananya, I would just want to confirm something. It seems the other emails were sent to PIs but Ananya was a...