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Problems with data sets

Open LF-Yang opened this issue 1 year ago • 0 comments

Wondering if the data set I'm working with has to have the same structure as the sample data set, I ran into this problem with my own data Traceback (most recent call last): File "D:/Code/SC3/SC3s/run.py", line 7, in sc.pp.filter_genes(adata, min_cells=10) File "C:\Users\ThinkPad.conda\envs\Tensor1\lib\site-packages\scanpy\preprocessing_simple.py", line 259, in filter_genes X if min_cells is None and max_cells is None else X > 0, axis=0 TypeError: '>' not supported between instances of 'File' and 'int'

LF-Yang avatar Jun 06 '23 02:06 LF-Yang