BS-Snper
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Previously, only the last operation of the CIGAR string was recorded in `record->cigar`. This caused basecalls to be ignored and/or placed at the wrong reference position. The bug has now...
I have a BAM file with reads that contain an insertion at a specific position. I noticed that the basecall counts in the `--output` file produced by `rrbsSnp` (and subsequently,...
next unless(/^\@SQ/);
1. Several arguments were incorrectly converted to integer instead of float which rounded them. Arguments (like minhetfreq) that were in range (0, 1) were rounded to 0 and hence always...
BS-Snper
BS-Snper can be used for bam of bismarck?