BS-Snper icon indicating copy to clipboard operation
BS-Snper copied to clipboard

Published 20 hours ago • verified publisher icon hellbelly

empty output file

Open alexyfyf opened this issue 4 years ago • 4 comments

Hi team,

I tried BS-Snper on my RRBS data. The methylation calling and intermediate files were generated, but the final output is empty, however. I followed exactly your example code, and the bam file is from bismark. Could you help how to debug this? Thank you!

alexyfyf avatar Sep 15 '20 04:09 alexyfyf

We have the exact same issue! @alexyfyf did you identify a cause of your empty output files? Better yet, a solution?

laurahspencer avatar Jul 05 '22 22:07 laurahspencer

We have the exact same issue! @alexyfyf did you identify a cause of your empty output files? Better yet, a solution?

Sorry I gave up and have got a way to make it work.

alexyfyf avatar Jul 07 '22 03:07 alexyfyf

@alexyfyf We are having the same issue. How did you manage to solve this in the end?

DCGreen-Mitra avatar Sep 27 '22 10:09 DCGreen-Mitra

@alexyfyf We are having the same issue. How did you manage to solve this in the end?

Sorry, I gave up and have not got a way to make it work.

alexyfyf avatar Sep 28 '22 06:09 alexyfyf