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Published 20 hours ago • verified publisher icon hellbelly

not finding samtools error

Open shawpa opened this issue 3 years ago • 1 comments

I am receiving the following error. The issue appears to be that samtools isn't in my BS-Snper directory. It is installed on its own.

Can't exec "/shared/bin/BS-Snper/samtools-0.1.19/samtools": Permission denied at /shared/bin/BS-Snper/BS-Snper.pl line 129. Permission denied at /shared/bin/BS-Snper/BS-Snper.pl line 129.

Is there a way to provide a "path to samtools" or maybe modify line 129 in the script to look for samtools in another location?

Annie

shawpa avatar Apr 14 '21 14:04 shawpa

You can run chmod +x /shared/bin/BS-Snper/samtools-0.1.19/samtools to fix this.

galaxy001 avatar Apr 15 '21 03:04 galaxy001