Heikki Lehväslaiho

emacs need custom.el file to start cleanly

2

By deleting our custom.el file you cause emacs not to start cleanly. One line instruction have been added to emacs.org so that other users who fork this repo are not...

Consider using File::ShareDir for configuration and template files

1

I tried installing sqitch using homebrew (failed, not explored) and cpanm from perlbrew. The installation with perlbrew cpanm went without problems: all tests pass. However, the first tried command on...

org-mode capture prevents saving when emacs looses focus

1

I found this problem out at the worst possible way: writing a long text over a period of time and having emacs to crash when exiting the capture frame with...

When I use org-noter to open an epub file, I can navigate the various chapters of a book through the table of contents with ease. When I start reading and...

ledger incorrectly parses the currency from the last transaction in an org src block

3

Ledger seems to drop or incorrectly parse the last transaction in an org mode src block. Removing the value from one of the lines that forces it to calculate the...

I have written an interactive convenience function to add notes about the transaction to the ledger entry under the point. It saves time and effort in finding the right spot...

Enhancement: provide documentation for eshell command line commands

2

Helpful recognises eshell functions in the form 'eshell/nnn' since they are standard elisp functions, but it reports "Not bound: nnn" for command line commands. Could helpful check if the the...

‎The DDBJ/ENA/GenBank accession number change

2

https://ncbiinsights.ncbi.nlm.nih.gov/2018/12/03/adapting-flatfile-parsers-genbank-new-accession-formats/ "the LOCUS line, includes the “Locus Name” (usually identical to the accession number), which may now grow to as long as 20 characters." "See section 3.4.4 of the GenBank...

Failing tests

5

Do people run 'prove -w t/*' frequently or do you rely only on travis? These tests fail before and after my commits today and yesterday. This is perl 5, version...

Ethnicity

10

Like discussed in last night's GA4GH call, I'd like to propose opening up discussion on how to include ethnicity in phenopackets 2.0. My impression from the discussion was that simple...