Jamie Sherman

Thanks @sebi06! I'll have a look ASAP.

Hi @sebi06 Thanks for raising this. I'll read the docs again but the bounding box I'm returning is the boundingBoxLayer0Only. It's defined in libCZI as shown below. I suspect that...

@sebi06 your guess sounds likely to me. I got my wires crossed when I looked at what you were saying initially. I thought the bounding box size was wrong but...

Hi @sebi06, I've been working on this in the context of reconstructing the image in aicsimageio as a dask.array. Using your example file I get the results you expect when...

Is there any chance you can share the file you are trying to read solely for the purpose of debugging? [email protected]

So I just did a few local sanity checks with a mosaic file I have. The output ``` SCMYX [{'X': (0, 1600), 'Y': (0, 1200), 'C': (0, 1), 'M': (0,...

So the code for stitching together the mosaic files is from Zeiss, specifically [libCZI](https://github.com/zeiss-microscopy/libCZI). My understanding is that Mosaic files can be acquired in various ways with gaps between the...

@markemus Can you share the image file with me that is causing this or was this resolved? Also, could you check the version you have installed? I reimplemented the core...

@markemus Thanks for letting me know. Details wise 1) what's the pixel type? 2) what does dims_shape() return? I doubt upgrading to 2.8.0 will fix it but it might be...

I'm rusty on this but if I remember correctly it's the format that Zeiss's libczi takes. It could possibly translate into a more sensible system but I was hesitant to...