heatherkellyucl
heatherkellyucl
Package: RStudio package: quanteda.textstats Detail: Pending confirmation from Tom's students that it will not load Ticket/requester: [IN05912689](https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05912689&recordId=a1N07000004Wtu5&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId=) Cluster: RStudio server
Test jobs submitted with our RMPISNOW example to confirm failure.
On Myriad with one node, I do get this error: ``` GERun: mpirun RMPISNOW Loading required package: utils Error: cannot add binding of '.MPIrun' to the base environment ``` I...
R 4.1.1 I get this error ``` As of version 3.0.0, the "sm" BTL is no longer available in Open MPI. Efficient, high-speed same-node shared memory communication support in Open...
R 4.1.1 I'm getting this error when setting ``` export OMPI_MCA_btl='tcp,vader,self' mpirun -np 1 R CMD BATCH test_rmpi.r test_rmpi_${NSLOTS}_${JOB_ID}.out ``` ``` Open MPI detected an inbound MPI TCP connection request...
10.128.17.101 is `ib0` on that node. 10.34.4.101 is `eno1` 10.128.25.101 is `ib0:0` 192.168.122.1 is `virbr0` Maybe we want to tell it to use `eno1` since IB is the storage network?...
I had better check what happens with 2 nodes on the Economics bit of Myriad. Fails init: ``` It looks like MPI_INIT failed for some reason; your parallel process is...
The 2-node Rmpi processes output these errors: On head node ``` [1635856407.612162] [node-d97a-005:224742:0] wireup.c:910 UCX ERROR old: am_lane 0 wireup_lane 255 reachable_mds 0x1ab [1635856407.791953] [node-d97a-005:224742:0] wireup.c:918 UCX ERROR old: lane[0]:...
I think the 2-node problem is a similar device-choice issue. For within-node Rmpi, setting these = happy and working. ``` export OMPI_MCA_btl='tcp,vader,self' export OMPI_MCA_btl_tcp_if_include='eno1' ``` Does _not_ fix it for...
Oh, the R module also sets ``` setenv OMPI_MCA_pml ob1 ``` which ought to be `ucx` here, I am pretty sure. (`ob1` is fine for single node, we set `--mca...