clonevol

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error input from ClonEvol for fishplot

1

Hello, I get the following error when running generateFishplotInputs(). Can you please help me fix this? I have attached the input data.txt file for your reference. f = generateFishplotInputs(results=y) Error...

Tinalxt

tree plotting error

5

Hello: I try to used the clonevol in my data (13 samples and 8 clone clusters). the infer.clonal.models run successfully without any warning or error.. But the plot.clonal.models and plot.all.trees.clone.as.branch...

xtmgah

NA error

13

Hi! I 've recently used SciClone for a sample pair of primary and relapse. In the output table, the are some NA values which, as far as I know, correspond...

nesilin

Hi! This was in a previous topic several months ago but was never answered. I was wondering if there are example files for 'trees.tsv' and 'variants.tsv'? The descriptions are a...

aklein-705

It seems as though the driver annotation information is lost when converting the clonevol object with `generateFishplotInputs()`. Is it possible to label the fishplot with the driver annotations?

mdiaz09

error in convert.consensus.tree.clone.to.branch

4

Hello, I am running clonevol and 'infer.clonal.models' identified 6 consensus models and Number of unique pruned consensus trees: 1. Next step 'transfer.events.to.consensus.trees' works fine. I get following error in the...

jsha129