clonevol
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hdng
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
Dear Dr Dang, The new version of PyClone (VI) gives the same CCF value in all variants sharing the same cluster per sample. Quoting the author of PyClone: "This is...
Hi, First of all, thanks for distributing the software. I generated the input for clonevol using pyclone-vi and ran the 'infer tree' process of the clonevol, but the following error...
Dear Dang, When I run the infer.clonal.models() for parents order, I meet a problem. I reads the old issues about this question, but the method all not worked. ===============Error:================== Sample...
Hi, I am trying to find a consensus tree for a three sample patient data. It works for some patients, and I do get the individual sample clonal architecture models,...
Hi, I want to apply your package to my somatic mutation data, but I am not quite sure whether my input data is sufficient. The somatic mutation data I have...
I knew you have a short description on these 2 files but please still provide us these 2 files so we can confirm the inputs are not problematic. tree.file |...
Hi, I find a bug within the plot.all.trees.clone.as.branch(). When the founding clone is not 1, then there is a bug when plot the tree. My code is as following: ```...
Hello, It appears that`build_tree` is calling `infer.clonal.models` with an argument called **post.sample.col**, however, this does not exist in infer.clonal.models, so it generates an error. When I run a copy of...
Hi, thanks for the wonderful tool you developed! Can you help me deal with a issue? while I was using your example data from aml1$variants and the code you provided...
Dear ClonEvol team & community I have an issue when visualizing the ClonEvol data, could you please give me some suggestion to solving these problem below? I already attached my...
