Henk den Bakker

Hi Guys, Remember I have been able to solve this by altering the code around line 75/76 (where parallel is implemented I believe) , look at my fork. Works like...

You're welcome! Happy to contribute. Have been making the change in the script every time a new version came out. Tell me if you need more info. Sent from my...

Yup, no memory issue, none of the per-sample index files are present, except index_0, and that one is empty

OK, I think i have found the 'bug', I was able to reproduce exactly the same error while writing a bash-based wrapper; parallel --gnu does not seem to like it...

Nope, removing --gnu does not do the trick for Ubuntu

OK, may have solved it. Created a pull request.

'There is a separate question as to what the confidence of a ./. call is - will look into this' Would indeed be great if we could distinguish between truly...

Hi Valentin-Bio, Thank you for your interest in sepia! This sounds like a conda/Rust problem not something that has anything to do with sepia. I tried to recreate your error...

Yes, that would be a nice feature! I have a `read_filter` subcommand that I am going to add to sepia that does something similar after a classification run. It is...