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Quality Control visualizations

Open chenqing1991 opened this issue 1 year ago • 0 comments

Hi,I have just learned the scRNA-seq_online course,I have a question

when you visualiza the UMI counts (transcripts) per cell by code as bellow:

Visualize the number UMIs/transcripts per cell

metadata %>% ggplot(aes(color=sample, x=nUMI, fill= sample)) + geom_density(alpha = 0.2) + scale_x_log10() + theme_classic() + ylab("Cell density") + geom_vline(xintercept = 500)

I'm wonder should the xintercept parameter changed by log10( )? Just as this : +geom_vline(xintercept = log10(500))

Thanks very much!

chenqing1991 avatar Nov 12 '23 18:11 chenqing1991