scRNA-seq_online
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Quality Control visualizations
Hi,I have just learned the scRNA-seq_online course,I have a question
when you visualiza the UMI counts (transcripts) per cell by code as bellow:
Visualize the number UMIs/transcripts per cell
metadata %>% ggplot(aes(color=sample, x=nUMI, fill= sample)) + geom_density(alpha = 0.2) + scale_x_log10() + theme_classic() + ylab("Cell density") + geom_vline(xintercept = 500)
I'm wonder should the xintercept parameter changed by log10( )? Just as this : +geom_vline(xintercept = log10(500))
Thanks very much!