rnaseq_overview
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hbctraining
Short course describing the considerations for a successful RNA-seq experiment
Before and/or during raw data QC lesson - [ ] Logging in to the cluster - [ ] Starting an interactive session - [ ] Few basic commands: mkdir, cd,...
This may not be possible for some lessons, but when possible we should move everything to markdown.
Change to markdown and hone the material - maybe include troubleshooting, look at FASTQC report, maybe remove some error profiles
All tools (gene and transcript level DE) can be summarized in a table format instead of having paragraphs of text
The sequencing technologies slide deck could be updated with new rnaseq technologies from nanopore https://nanoporetech.com/rna also just check whether this info is correct
I think it would be useful to have some example scenarios of data/experimental design and ask participants to consider which workflow would be most appropriate
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Short course describing the considerations for a successful RNA-seq experiment