Harald Barsnes

Hi Ulrich, If you look up PeptideShaker versions from 4-5 years ago you'll find the old school Mascot sequence coverage display. ;) Pretty sure we still have the code somewhere....

> re older PeptideShaker and SearchGUI versions: is there a way to download them? You can find old versions of PeptideShaker [here](http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/) and old versions of SearchGUI [here](http://genesis.ugent.be/maven2/eu/isas/searchgui/SearchGUI/). The even...

Issue assumed resolved with the release of PeptideShaker v3.0.0. If this is not the case, please let us know and we'll reopen the issue.

Would it be possible for you to share the PeptideShaker log file? You will find it via the PeptideShaker Welcome Dialog > Settings & Help > Help > Bug Report....

It seems like you are using a very old version of PeptideShaker. We are now at PeptideShaker version 2.2.2. I would recommend that you update to the most recent version...

Can you send me the log file from the new version as well? Then I will have a closer look at the current code and hopefully come up with a...

It looks like you are running into a known backend issue in which the only known solution is to increase the amount of memory you provide to PeptideShaker. You can...

> I have already done that...given it 110Gb ram....in the previous version the same data was executed with 90Gb space !! Ah, in that case I'm afraid I've run out...

Hi Chris, This looks more like a Java stability issue than an issue within the PeptideShaker code? We've been using Java 14 for some time and have not come across...

Great! Thanks for the update! I will then close the issue and we can hope that a more stable Java 15 (or newer) will become available in the future.