Hasindu Gamaarachchi

Perhaps the method that I use for building [f5c](https://github.com/hasindu2008/f5c/) and [slow5tools](https://github.com/hasindu2008/slow5tools) could be adapted to nanopolish which seems to have worked in most circumstances (either with inbuilt clang or homebrew...

I think you clone the gitrepo rather than compiling a release. Try the following instructions: ``` brew install hdf5 VERSION=v1.1 wget "https://github.com/hasindu2008/f5c/releases/download/$VERSION/f5c-$VERSION-release.tar.gz" && tar xvf f5c-$VERSION-release.tar.gz && cd f5c-$VERSION/ scripts/install-hts.sh...

@jts Nanopolish make file has an option to specify the location of an existing HDF5 library right? If that is the case, providing the homebrew location to prevent compiling HDF5...

Unfortunately, we are still in the process of deriving a model for R10.4.1 (aka LSK 114). The current built-in models in f5c are for R9.4.1, so I am surprised it...

If it goes according to the plan, like one month. But these things rarely go according to the plan :D. So I would say a couple of months.

Hi Your minimap2 execution has failed. If you see the logs you attached it says [ERROR] failed to write the results: Disk quota exceeded You will freeup some space on...

It is always recommended to submit these as a job. But the problem here seems to be your storage quota. Are you perhaps writing files to your home directory instead...

Hi Patrick, Thanks for the warm compliments. In the dev branch of f5c, I recently cleaned up the code so it would be a bit cleaner. That part in f5c...

Great. Let me know if you are facing any difficulties. I think your approach of replacing the signal is better than skipping it completely; the signal indexes are now consistent...

It seems you have implemented the option flag correctly - I just skimmed through it. Options are simply stored in a 64-bit integer where each bit is a flag. Bit...