Mike Harms

Thanks for the report. I just merged the PR I referenced above. I still have not been able to reproduce the error on my end. Can one of you try...

@jjvanantwerp Thanks for the bug report and sorry for the slow reply. Dangerous having the prof in charge of package maintenance... I looked through your log file; it appears you're...

@jjvanantwerp : Thanks for the file! I am able to reproduce the error and am working on this now. @lbleicher : thanks for the detailed error message. I'll look into.

@jjvanantwerp Should be fixed now. I just merged a PR with the change. You should be able to run the following to install the latest and greatest version. Thanks for...

Glad we made progress! The wrap function will always throw an error; it’s a way to capture internal errors and make sure the crashing function returns to the right directory,...

Hi James, Yep, alignment is too small. This mini-dataset only has a few, nearly identical, sequences that are trimmed out during the quality control step. Maybe try going back upstream,...

Ah, I think I might understand. Did you only include a one human sequence in there as a seed? If so, topiary is only looking for human/primate sequences because the...

Hopefully it works for you then. 🤞Topiary fills in sequences within the species boundaries defined in the seed data frame. You basically need one more sequence in your seed data...

Okay, it should work now. (Or, actually, it should *fail* now with a useful error). It turns out one of your species, Gulo gulo luscus, is not in the open...