number of threads

[XiaXiaTianTian]

Hi, everyone. If it is possible to set the number of threads for xpclr? Because xpclr always call all avaliable threads of the queue. May influence other running jobs.

[XiaXiaTianTian]

Error. nthreads cannot be larger than environment variable "NUMEXPR_MAX_THREADS" (64)2022-08-30 09:30:36 : INFO : running xpclr v1.1.2 2022-08-30 09:30:36 : INFO : Loading VCF 2022-08-30 09:30:37 : INFO : VCF loading complete 2022-08-30 09:30:37 : INFO : 144,800 SNPs in total are in the provided input files 2022-08-30 09:30:37 : INFO : 0 SNPs excluded as multiallelic 2022-08-30 09:30:37 : INFO : 1,544 SNPs excluded as missing in all samples in a population 2022-08-30 09:30:37 : INFO : 60,967 SNPs excluded as invariant or singleton in population 2 2022-08-30 09:30:37 : INFO : 82,289/144,800 SNPs included in the analysis (56.83%) 2022-08-30 09:30:37 : INFO : Done dropping above SNPs from analysis. XP-CLR algorithm starting. 2022-08-30 09:30:37 : INFO : No genetic distance provided; using rrate of 1e-08/bp 2022-08-30 09:30:37 : INFO : Omega estimated as : 0.683824 2022-08-30 12:22:11 : INFO : Analysis complete. Output file ./e_m/e.m.LG01.out

[XiaXiaTianTian]

And this is the command /ds3200_1/users_root/miniconda3/envs/xpclr/bin/xpclr --format vcf --input /ds3200_1/users_root/final/1.ld.vcf.gz --samplesA e --samplesB m --chr LG01 --minsnps 10 --maxsnps 300 --size 20000 --step 10000 --out ./e_m/e.m.LG01.out