The xpclr score is 0.0

[shehongbing]

Hi, when I used the following command to analyze my data, the xpclr score equal 0.0. i do not know why xpclr --format txt --out Dom_Sie.txt --map map.snp --popA Dom.geno --popB Sie.geno --chr Chr01 --ld 0.95 --maxsnps 600 --size 50000 --step 50000

and the results is following, id chrom start stop pos_start pos_stop modelL nullL sel_coef nSNPs nSNPs_avail xpclr xpclr_norm Chr01_00000001_00050000 Chr01 1 50000 0 0 0.0 0.0 Chr01_00050001_00100000 Chr01 50001 100000 0 0 1.0 1.0 Chr01_00100001_00150000 Chr01 100001 150000 0 0 0.0 0.0 Chr01_00150001_00200000 Chr01 150001 200000 0 0 0.0 0.0 Chr01_00200001_00250000 Chr01 200001 250000 0 0 1.0 1.0 Chr01_00250001_00300000 Chr01 250001 300000 0 0 0.0 0.0 Chr01_00300001_00350000 Chr01 300001 350000 0 0 0.0 0.0 Chr01_00350001_00400000 Chr01 350001 400000 359618 379247 -47.42958138330139 -47.42958138330139 0.0 17.0 17.0 0.0 -0.25774711755147994

Thank you very much

Sincerely,

She

[hardingnj]

It looks like because you have no eligible SNPs in the windows before 35_000. The final window is normalised to 0.0, as that is the only window with an XP-CLR value.