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Published 20 hours ago • verified publisher icon hammerlab

Variants do not support ends

Open Georgehe4 opened this issue 8 years ago • 3 comments

The variant type structure in main/vcf.js supports only a starting position without an ending position.

Georgehe4 avatar Oct 27 '16 18:10 Georgehe4

Resolved - encoded in ref and alt alleles

Georgehe4 avatar Oct 27 '16 19:10 Georgehe4

Reopening - variant specification should include an end.

Georgehe4 avatar Oct 27 '16 20:10 Georgehe4

@Georgehe4: can you let me know why you need the end coordinates? The variant track is currently tailored towards showing single nucleotide variants and the main/vcf.js reflects that as the end coordinate is not needed for that type of variants.

Happy to get this in, but just need more information about how/why it will be used before adding this support.

armish avatar Nov 08 '16 21:11 armish