pileup.js
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Include small samples of 2bit/BB/bam files for easier testing
We currently depend on external 2bit (for reference) and BB (for genes) files for testing/demoing. Instead, it would be great to have relatively small slices of them in the repository.
These will include the following files that span the range chr17:7500000-7515000
- [ ] a slice of the
hg19.2bit
file - [ ] a slice of the
ensGene.bb
file - [ ] a small bam files with unpaired reads
one problem is that there's no such thing as a 2bit "slice" — each chromosome always starts at position 1. We could work around this by making a ShiftedTwoBit
class that wraps TwoBit
, but this might be confusing for our introductory example.
ah, I see. That 2bit file will require some more thinking then.