Make a public bucket or NFS filer available w/ sample data

[hammer]

It would be nice for potential users to be able to run the pipeline against some sample input and output data to confirm they're running a pipeline correctly.

[timodonnell]

Also 3 WGS BAMs here, 1 normal and 2 tumors, for which it would be great to get mutect/strelka calls:

https://console.cloud.google.com/storage/browser/variant-calling-benchmarks-data/aocs/?project=pici-1286

And Arun's DREAM data:

https://console.cloud.google.com/storage/browser/dream-challenge/?project=pici-1286

On Mon, Aug 8, 2016 at 9:45 PM, Jeff Hammerbacher [email protected] wrote:

@smondet https://github.com/smondet notes we can use the DREAM chr20 BAMs by adding :seb-test-nfs-server-vm,/seb-test-storage,Hello.md,/ nfstest1 to CLUSTER_NFS_MOUNTS

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[arahuja]

Both of those are private buckets. The DREAM data is available in a public bucket at gs://public-dream-data/

[hammer]

The sample data should include reference + index and dbSNP/ExAC/COSMIC

[hammer]

Looks like hg38 is available w/ index: https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0/