cytokit
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hammerlab
Microscopy Image Cytometry Toolkit
When I tried to run the example, it reported the following errors. 2022-09-07 21:04:53,032:INFO:91:root: Execution arguments and environment saved to "/tmp/cytokit-example/cellular-marker/20181116-d40-r1-20x-5by5/output/v00/processor/execution/202209072104.json" 2022-09-07 21:05:00,776:INFO:91:cytokit.exec.pipeline: Starting Pre-processing pipeline for 1 tasks (1...
This tool looks really cool and I'd like to implement it at our organization! However, I'm new to image analysis and cannot for the life of me figure out how...
Bumps [distributed](https://github.com/dask/distributed) from 1.28.1 to 2021.10.0. Commits 63ebaea bump version to 2021.10.0 1670cf8 Ensure resumed flight tasks are still fetched (#5426) cdc68cc AMM high level documentation (#5456) 33d83bc Provide stack...
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Bumps [numpy](https://github.com/numpy/numpy) from 1.16.0 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...
Bumps [dask](https://github.com/dask/dask) from 1.0.0 to 2021.10.0. Commits 97494ff bump version to 2021.10.0 ac01ddc da.store to create well-formed HighLevelGraph (#8261) 9f0f002 CI: force nightly pyarrow in the upstream build (#8281) a544670...
Bumps [opencv-python](https://github.com/skvark/opencv-python) from 3.4.3.18 to 4.2.0.32. Release notes Sourced from opencv-python's releases. 4.2.0.32 opencv-python: https://pypi.org/project/opencv-python/ opencv-contrib-python: https://pypi.org/project/opencv-contrib-python/ opencv-python-headless: https://pypi.org/project/opencv-python-headless/ opencv-contrib-python-headless: https://pypi.org/project/opencv-contrib-python-headless/ OpenCV version 4.2.0. Changes: macOS environment updated from xcode8.3...
Hi, thank you for sharing this useful tool, i'm running the example script and got stuck at downloading raw data. 
First, this is a great project and we think it's very powerful. We have had really bad poor segmenation with our own data using cytokit. We have however seen seen...
Dear cytokit-team, recently I read your paper and found it really cool toolkit. We are also working with a multiplexing technique which is called "Multi Epitope Ligand Cartography" (MELC). I...
Hi team, I was trying to test out the cytokit UI for one of the example datasets shown in the notebook. The process seemed to go through without any errors...
