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Published 20 hours ago • verified publisher icon hammerlab

Update isovar usage

Open tavinathanson opened this issue 8 years ago • 1 comments

@iskandr is changing a few things around. Also, his comment from before:

My only suggestion would be to maybe increase the minimum MAPQ to 1 and if you're ultimately using the counts of neoepitopes with >= 3 spanning reads then this will be very sensitive to the degree of exonic coverage. Maybe normalize by number of reads mapping to exons?

tavinathanson avatar May 03 '16 20:05 tavinathanson

Also see https://github.com/hammerlab/bladder-analyses/issues/4#issuecomment-222227666 (sorry to link to a private repo).

tavinathanson avatar May 28 '16 03:05 tavinathanson