Jeff Hammerbacher

Results 167 comments of Jeff Hammerbacher

Do something with epidisco.py

+1 to `discohorts`

Use `gci` (or another alternative) as the base node image

@smondet looks like this one's fixed upstream and will be available in GKE 1.4.7 real soon now: https://github.com/kubernetes/kubernetes/issues/33447

Hard to find stdout

Wow I'm surprised that kube mixes stdout and stderr! Please vote at https://github.com/kubernetes/kubernetes/issues/28167 and hopefully they'll fix that soon.

Detect and retry jobs that Kubernetes failed to start

Just noting that we currently retry 10 times; it would be nice to have some empirical justification for that number. Also noting how @ihodes saw this failure manifest: > this...

Detect and retry jobs that Kubernetes failed to start

File an issue upstream?

Support both HDFS and NFS/other file systems for BAM files

Cf. #682 #663

Support both HDFS and NFS/other file systems for BAM files

I think it makes sense to support object stores (e.g. S3) as well for BAM/VCF storage.

Support both HDFS and NFS/other file systems for BAM files

@ckandoth also you can sign up for our public Slack instance where we hope to support users of our software, some day: http://publicslack.hammerlab.org.

Need ACL with User Groups

Yeah this is something we should do now though.

Which features are we interested in resurrecting?

Definitely the data profiling visualizations.