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Published 20 hours ago • verified publisher icon hall-lab

Reference genotypes with no support

Open ernfrid opened this issue 6 years ago • 1 comments

I'm seeing samples genotyped as follows:

GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:1:4.77:0,0,0:0:0:0:0:0:0:0:0:0:0:.

It seems like this should be reported as a null genotype instead...

ernfrid avatar Oct 18 '17 14:10 ernfrid

This situation happens when there are no reads found for a given region in a given SV.

indraniel avatar Nov 01 '17 22:11 indraniel