Joint genotyping multi-sample vcf

[andrewSharo]

Hi Brent and Dave, Not sure if this question is more appropriate here or under svtools. I have been jointly calling SVs in families with Lumpy. Is there a command I can use to jointly genotype these SVs and save me from splitting the vcfs, genotyping them separately, and merging them back together? The samples names and bam names are identical. Best, Andrew