speedseq
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Improve align() by using process substitution (replace named pipe)
Hi @cc2qe , I created a patch for aligh(), which also can apply to realigh(). I found this patch can:
- simplify implementation
- avoid to create intermediate named pipes
- slightly improve performance
Running time of named pipe on default example:
real 0m12.965s
user 0m13.404s
sys 0m0.958s
Running time of process substitution on default example:
real 0m12.304s
user 0m13.087s
sys 0m0.895s