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Published 20 hours ago • verified publisher icon hall-lab

Update dependencies (submodules) so that the project builds on Linux ARM64

Open martin-g opened this issue 3 years ago • 3 comments

Add Github Actions based CI. It builds and tests on Linux x86_64 and aarch64

martin-g avatar Oct 18 '22 08:10 martin-g

Fixes #149

martin-g avatar Oct 18 '22 08:10 martin-g

Any feedback on the proposed changes ? Without these changes it is impossible to use speedseq on ARM64 due to the usage of x86_64 binary for Sambamba. This PS uses Sambamba as a submodule and builds it for the current CPU architecture. Also this PR updates Bwa to a newer version that supports ARM64.

martin-g avatar Nov 08 '22 07:11 martin-g

I also needed to build speedseq on Linux ARM64! Thank you, @martin-g ! I hope this PR is merged soon!

emiliofernandes avatar Nov 28 '22 14:11 emiliofernandes