napari-segment-blobs-and-things-with-membranes
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haesleinhuepf
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
As discovered in #33 our filters (maximum, median, etc) currently use a square-footprint (`np.ones`), even though a disc/sphere would be biologically more useful. We should update all our filters. ##...
Since the name `Extract slice` is generic I thought it might work for any napari layer. However, the widget does indicate that it only works on image layers though. I...
Hi Marcelo @zoccoler, this adds the Gabor filter and closes #18 Before merging it, I would like to fix some little things. At the moment, the filter produces an image...
Hi @haesleinhuepf , As discussed, it would be interesting to have [scikit-image gabor filters](https://scikit-image.org/docs/stable/api/skimage.filters.html#skimage.filters.gabor) as well. It can help with pixel classification by allowing recognition of directions or texture, as...
Hey @haesleinhuepf Very useful collection of image processing functions in this plugin! I've been trying to use it with OME-Zarr files (using the awesome [napari-ome-zarr plugin](https://github.com/ome/napari-ome-zarr) to read them lazily...
I would like to segment cells in an image with membrane staining. Can I do this with nsbatwm? git-bob comment
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A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.