napari-accelerated-pixel-and-object-classification

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Add corrections for multiple testing in correlation matrix

2

Hey @haesleinhuepf, I was just reading @marabuuu's awesome blogpost about feature extraction and saw that you suggest using the correlation matrix implemented here. Recently I was using correlation matrices in...

Cryaaa

Currently, before computing the `feature_correlation_matrix` all rows with NaN values are removed (see [documentation](https://github.com/haesleinhuepf/napari-accelerated-pixel-and-object-classification#feature-correlation-matrix) and code) https://github.com/haesleinhuepf/napari-accelerated-pixel-and-object-classification/blob/68da4c98e34a5a5a41e401affd3c41f03d5e6a33/napari_accelerated_pixel_and_object_classification/_custom_table_row_classifier.py#L264 However, in my case I had the measurement `moments_normalized` in my table. This...

marabuuu

Voxel size of output-layer is different from input layer

3

reported here: https://forum.image.sc/t/napari-accelerated-pixel-object-classification-apoc-output-scale-input-loading/77106

haesleinhuepf

Error in GPU selection

7

Hello, Thank you very much for this software. I just installed the plugin from napari and tried to run the Semantic Segmentation (APOC) with various 2D example data from napari....

Pacomito

Hi everyone, I noticed that the Object Segmentation (Tools -> Segmentation Labeling -> Object Segmentation (APOC)) does not generate a new labels layer with the output. I believe this may...

zoccoler

This was first posted on image.sc : https://forum.image.sc/t/napari-object-classification-apoc-failing-on-m2-mac/85733/1 I've hit the same thing: https://forum.image.sc/t/napari-object-classification-apoc-failing-on-m2-mac/85733/7?u=psobolewskiphd Opening this issue as maybe this is a better place for discussion a workaround or fix....

psobolewskiPhD

Add inference ability for custom features classifier.

10

Hi, Thank you for creating such a valuable tool! My team and I have been using the custom features classifier widget to classify nuclei, and we've found it very effective....

daviddaytw