bia-bob
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haesleinhuepf
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
I think at the moment it is not possible to combine gemini as vision model with claude as text model. Some code cleaning will be necessary to make this work.
When using bob from Pycharm, it seems unable to add new code cells to notebooks. CC @foerster-finsternis
 Seems a similar issue like in Pycharm: * #134 Visual Studio works though
I see this error when using the Vertex API: ``` File [C:\structure\code\bia-bob\src\bia_bob\endpoints\_googlevertex.py:26](file:///C:/structure/code/bia-bob/src/bia_bob/endpoints/_googlevertex.py#line=25), in generate_response_from_vertex_ai(model, system_prompt, user_prompt, chat_history, image, vision_model, vision_system_prompt) 24 if image is None: 25 if Context.client is None...
It would be great if bob could do the following: * Take a notebook, * Move all [helper-]functions and complex code blocks into a separate python file * Import the...
I had some discussions about this recently, e.g. with @guijacquemet, also @tischi is interested in this. I see a couple of options for supporting users in maintaining good scientific practice...
Thst might be helpful, e.g. when generating notebooks: https://x.com/alexalbert__/status/1812921642143900036?t=96sXN1XbVA98ewRyouWhQA&s=19
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BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.