Hadrien Mary

Automatic computation of interactions between different structures

3

According to https://github.com/molstar/molstar/issues/185#issuecomment-841206018 the only way to compute the non-covalent interactions between two structures (or two files) is to merge the structure together as it is done in the docking-viewer...

Hot kernel discovery

11

Is that technically possible to detect newly created Conda kernels and load it in an already running notebook? A kind of timer that would look for new kernels periodically.

Private token as env variables not working

2

We are running a private conda-forge like infrastructure (with a private conda channel) and our builds stopped working since `boa` is the new default in `conda-smithy` (see https://github.com/conda-forge/conda-smithy/pull/1507). Here is...

This PR contains multiple fixes required to build the conda-forge package of tmap. See https://github.com/conda-forge/staged-recipes/pull/12498

Patches

1

Here are two patches I used to be able to create a conda package for tmap using a modern compiler C++11. ```diff diff --git a/tmap/tmap/analyse.cc b/tmap/tmap/analyse.cc index b282b74..1d6e686 100644 ---...

Tag a new version

1

Could you add a tag to this git repository? This is useful to create a conda forge package.

See https://github.com/conda-forge/staged-recipes/pull/11685 for details

fcd has been ported to pytorch at https://github.com/insilicomedicine/fcd_torch How do you feel about supporting both fcd methods? You can use fcd by default and fallback to fcd_torch if fcd is...

ImageDisplay can't retrieve the current position of an Axis

7

Steps to reproduce : 1. Open Mitosis sample 2. Change the position of the different dimensions 3. Launch this script ``` python # @ImageDisplay img from net.imagej.axis import Axes print(img.getLongPosition(Axes.Z))...

ImageJ does not detect frame interval

2

I post it here but I really don't know where this bug should go wether scifio, fiji or imagej. When opening OME Tiff, frame interval (dt) is not detected (all...