h2o4gpu icon indicating copy to clipboard operation
h2o4gpu copied to clipboard

Issue getting a working python notebook in Jupyter docker images

Open hemenkapadia opened this issue 5 years ago • 5 comments

Following the instructions in section Running Jupyter Notebooks with Docker of the README file results in the below kernel error when trying to launch a Python 3 notebook from the Jupyter interface.

Traceback (most recent call last):
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/traitlets/traitlets.py", line 528, in get
    value = obj._trait_values[self.name]
KeyError: 'loop'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/web.py", line 1592, in _execute
    result = yield result
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 1133, in run
    value = future.result()
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 1141, in run
    yielded = self.gen.throw(*exc_info)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/notebook/services/sessions/handlers.py", line 73, in post
    type=mtype))
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 1133, in run
    value = future.result()
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 1141, in run
    yielded = self.gen.throw(*exc_info)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/notebook/services/sessions/sessionmanager.py", line 79, in create_session
    kernel_id = yield self.start_kernel_for_session(session_id, path, name, type, kernel_name)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 1133, in run
    value = future.result()
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 1141, in run
    yielded = self.gen.throw(*exc_info)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/notebook/services/sessions/sessionmanager.py", line 92, in start_kernel_for_session
    self.kernel_manager.start_kernel(path=kernel_path, kernel_name=kernel_name)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 1133, in run
    value = future.result()
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/tornado/gen.py", line 326, in wrapper
    yielded = next(result)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/notebook/services/kernels/kernelmanager.py", line 160, in start_kernel
    super(MappingKernelManager, self).start_kernel(**kwargs)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/jupyter_client/multikernelmanager.py", line 110, in start_kernel
    km.start_kernel(**kwargs)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/jupyter_client/manager.py", line 258, in start_kernel
    self.start_restarter()
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/jupyter_client/ioloop/manager.py", line 49, in start_restarter
    kernel_manager=self, loop=self.loop,
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/traitlets/traitlets.py", line 556, in __get__
    return self.get(obj, cls)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/traitlets/traitlets.py", line 535, in get
    value = self._validate(obj, dynamic_default())
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/traitlets/traitlets.py", line 591, in _validate
    value = self.validate(obj, value)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/traitlets/traitlets.py", line 1677, in validate
    self.error(obj, value)
  File "/opt/h2oai/h2o4gpu/python/lib/python3.6/site-packages/traitlets/traitlets.py", line 1524, in error
    raise TraitError(e)
traitlets.traitlets.TraitError: The 'loop' trait of an IOLoopKernelManager instance must be a ZMQIOLoop, but a value of class 'tornado.platform.asyncio.AsyncIOMainLoop' (i.e. <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7ff535b32f98>) was specified.

hemenkapadia avatar Sep 19 '18 20:09 hemenkapadia

Related to customer support issue https://support.h2o.ai/helpdesk/tickets/92731

hemenkapadia avatar Sep 19 '18 20:09 hemenkapadia

Relates to jupyterhub/jupyterlab-hub#62 and ipython/ipyparallel#318

hemenkapadia avatar Sep 19 '18 21:09 hemenkapadia

To unblock the customer, I created a custom docker image using h2o4gpu conda packages, available on the internal conda server, to create the notebook environment with h2o4gpu support. Once the conda env was created i downgraded tornado from 5.1 to 4.5.3 in that environment and everything worked as expected.

Trying that downgrade approach in the env created by pip (requirements.txt) in the docker runtime created other errors.

Possible next step is that once we have h2o4gpu release completed to anaconda cloud, we can update the docker runtime script to create a conda based environment vs the pip based one. I has better dependency management.

hemenkapadia avatar Sep 20 '18 18:09 hemenkapadia

@hemenkapadia did this work for the other person's case?

pseudotensor avatar Oct 01 '18 07:10 pseudotensor

I am waiting to hear back from the customer. She mentioned she was going to try this today, but that was a custom conda build. I will need to check the one with the new ipykernel.

hemenkapadia avatar Oct 01 '18 16:10 hemenkapadia