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TypeError: vars() argument must have __dict__ attribute

Open psychrb opened this issue 3 years ago • 2 comments

Pls advise: Is the below an ERROR in my input file, or please advise how I might resolve this ERROR, or further check this ERROR...THANKS!

COMMAND LINE: statSTR --vcf adVNTR_MergedFILE --vcftype advntr --out NEWFILENAME --thresh --afreq --acount --mean --mode --var --numcalled --samples CONT_samples,AFFECTED_samples --sample-prefixes CONT,AFFECTED

ERROR: Traceback (most recent call last): File "/hpc/packages/minerva-centos7/py_packages/3.7/bin/statSTR", line 8, in sys.exit(run()) File "/hpc/packages/minerva-centos7/py_packages/3.7/lib/python3.7/site-packages/trtools/statSTR/statSTR.py", line 597, in run if args == None: File "/hpc/packages/minerva-centos7/py_packages/3.7/lib/python3.7/site-packages/argparse-1.4.0-py3.7.egg/argparse.py", line 1200, in eq return vars(self) == vars(other) TypeError: vars() argument must have dict attribute

psychrb avatar Mar 05 '21 01:03 psychrb

Hello, I just tried several different settings to replicate this error and was not able to do so. Does the error persist? Is it possible to share the VCF file (or a portion of it) so I can replicate and fix the error on my end? Thanks. Nima

nmmsv avatar Mar 08 '21 21:03 nmmsv

Nima, Thanks. I emailed to you. If you prefer that I post on here, please advise...

psychrb avatar Mar 11 '21 19:03 psychrb