GangSTR
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generate str_info_file
Hi team,
Thanks for your time.
I'm using the GangSTR and dumpSTR tools on a set of WES data profiling tandem repeats from short reads. I have encountered some questions:
I want to use the str_info_generator script to generate a motif threshold file, but not sure how to prepare the files of
--disease', type=str, help='A file in bed format containing thresholds for high priority regions that need to be overwritten (Priority 4)'
--population', type=str, help='A file in bed format containing thresholds for low priority regions that need to be overwritten (Priority 2)'
--population-pad', type=int, default=0, help='Increasing the thresholds in population bed by this amount to avoid false positives.'