gwpy
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gwpy
Cannot import TimeSeries: No module named 'scipy.optimize._root'
This likely is just some versioning with scipy. These are the versions I have
scipy 1.10.1 py310h240c617_2 conda-forge
gwpy 3.0.7 pyhd8ed1ab_0 conda-forge
And here is my traceback
Traceback (most recent call last):
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/bin/bayeswave_post.py", line 7, in <module>
exec(compile(f.read(), __file__, 'exec'))
File "/Users/sophie/src/BayesWave_Cpp/bayeswave-cpp/bayeswavecpp_bindings/bayeswave_post.py", line 9, in <module>
import bayeswavecpp_bindings.bayeswave_post_utils as utils
File "/Users/sophie/src/BayesWave_Cpp/bayeswave-cpp/bayeswavecpp_bindings/__init__.py", line 18, in <module>
from .bayeswave_post import *
File "/Users/sophie/src/BayesWave_Cpp/bayeswave-cpp/bayeswavecpp_bindings/bayeswave_post.py", line 12, in <module>
from gwpy.timeseries import TimeSeries
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/site-packages/gwpy/timeseries/__init__.py", line 23, in <module>
from .timeseries import (TimeSeries, TimeSeriesDict, TimeSeriesList)
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/site-packages/gwpy/timeseries/timeseries.py", line 27, in <module>
from scipy import signal
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/site-packages/scipy/__init__.py", line 200, in __getattr__
return _importlib.import_module(f'scipy.{name}')
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/site-packages/scipy/signal/__init__.py", line 323, in <module>
from ._filter_design import *
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/site-packages/scipy/signal/_filter_design.py", line 16, in <module>
from scipy import special, optimize, fft as sp_fft
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/site-packages/scipy/__init__.py", line 200, in __getattr__
return _importlib.import_module(f'scipy.{name}')
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/Users/sophie/mambaforge/envs/bwcpp_env_103023/lib/python3.10/site-packages/scipy/optimize/__init__.py", line 406, in <module>
from ._root import *
ModuleNotFoundError: No module named 'scipy.optimize._root'
Can you post the full output of conda list for that environment?
And also, just to be sure, does python3 -c "from scipy import signal" work?
Oof unfortunately I just fixed it by upgrading scipy so I don't have exactly the old environment anymore. When I was in the environment from scipy import signal by itself did not work (outside of importing from gwpy).
# packages in environment at /Users/sophie/mambaforge/envs/bwcpp_env_103023:
#
# Name Version Build Channel
astropy 5.3.4 py310h7b7cdfe_0
autodiff 1.0.1 py310h4eff753_0 conda-forge
bayeswavecpp-bindings 0.0.dev0 dev_0 <develop>
blas 1.0 openblas
blosc 1.21.3 hcec6c5f_0
boost 1.78.0 py310h3e792ce_4 conda-forge
boost-cpp 1.78.0 h2f2b2fd_4 conda-forge
brotli 1.1.0 h0dc2134_1 conda-forge
brotli-bin 1.1.0 h0dc2134_1 conda-forge
brotli-python 1.0.9 py310h7a76584_8 conda-forge
bzip2 1.0.8 h0d85af4_4 conda-forge
c-ares 1.20.1 h10d778d_1 conda-forge
c-blosc2 2.8.0 hcec6c5f_0
c-compiler 1.5.2 hbf74d83_0 conda-forge
ca-certificates 2023.08.22 hecd8cb5_0
catch2 3.4.0 h1c7c39f_0 conda-forge
cctools 973.0.1 h76f1dac_13 conda-forge
cctools_osx-64 973.0.1 hcc6d90d_13 conda-forge
certifi 2023.7.22 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py310h6c40b1e_3
cfitsio 4.1.0 h2c97ad1_0 conda-forge
charset-normalizer 3.3.1 pyhd8ed1ab_0 conda-forge
clang 14.0.6 h694c41f_0 conda-forge
clang-14 14.0.6 default_h55ffa42_0 conda-forge
clang-format 14.0.6 default_h55ffa42_0 conda-forge
clang-format-14 14.0.6 default_h55ffa42_0 conda-forge
clang-tools 14.0.6 default_h55ffa42_0 conda-forge
clang_osx-64 14.0.6 h3113cd8_6 conda-forge
clangxx 14.0.6 default_h55ffa42_0 conda-forge
clangxx_osx-64 14.0.6 h6f97653_6 conda-forge
cmake 3.26.3 h4032537_0 conda-forge
compiler-rt 14.0.6 h613da45_0 conda-forge
compiler-rt_osx-64 14.0.6 hab78ec2_0 conda-forge
contourpy 1.0.7 py310ha23aa8a_0 conda-forge
cppyy 3.0.0 pypi_0 pypi
cppyy-backend 1.14.11 pypi_0 pypi
cppyy-cling 6.28.0 pypi_0 pypi
cpycppyy 1.12.13 pypi_0 pypi
cryptography 41.0.3 py310h30e54ef_0
cxx-compiler 1.5.2 hb8565cd_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dqsegdb2 1.2.1 pyhd8ed1ab_0 conda-forge
eigen 3.4.0 h940c156_0 conda-forge
expat 2.5.0 hf0c8a7f_1 conda-forge
ezdag 0.2.0 pyhd8ed1ab_0 conda-forge
fftw 3.3.10 nompi_h4fa670e_108 conda-forge
fonttools 4.43.1 py310hb372a2b_0 conda-forge
freetype 2.12.1 h60636b9_2 conda-forge
gsl 2.7 h93259b0_0 conda-forge
gwdatafind 1.1.3 pyhd8ed1ab_0 conda-forge
gwosc 0.7.1 pyhd8ed1ab_0 conda-forge
gwpy 3.0.7 pyhd8ed1ab_0 conda-forge
h5py 3.9.0 py310hf9d4033_0
hdf5 1.12.1 ha01d115_3
htcondor-classads 10.6.0 h59b5378_0 conda-forge
icu 73.2 hf5e326d_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
igwn-auth-utils 1.1.0 pyhd8ed1ab_0 conda-forge
kiwisolver 1.4.4 py310ha23aa8a_1 conda-forge
krb5 1.20.1 h049b76e_0 conda-forge
lalinference-data 3.0.3 h694c41f_0 conda-forge
lalpulsar-data 4.0.0 h694c41f_2 conda-forge
lalsimulation-data 3.1.2 h694c41f_1 conda-forge
lcms2 2.15 h2dcdeff_1 conda-forge
ld64 609 hc6ad406_13 conda-forge
ld64_osx-64 609 hfd63004_13 conda-forge
ldas-tools-al 2.6.7 h5095954_4 conda-forge
ldas-tools-framecpp 2.9.2 h7221f53_0 conda-forge
lerc 4.0.0 hb486fe8_0 conda-forge
libaec 1.0.6 hf0c8a7f_1 conda-forge
libblas 3.9.0 19_osx64_openblas conda-forge
libbrotlicommon 1.1.0 h0dc2134_1 conda-forge
libbrotlidec 1.1.0 h0dc2134_1 conda-forge
libbrotlienc 1.1.0 h0dc2134_1 conda-forge
libcblas 3.9.0 19_osx64_openblas conda-forge
libclang 14.0.6 default_h55ffa42_0 conda-forge
libclang-cpp14 14.0.6 default_h55ffa42_0 conda-forge
libclang13 14.0.6 default_hb5731bd_0 conda-forge
libcondor_utils 10.6.0 he425dc9_0 conda-forge
libcurl 7.88.1 h6df9250_1 conda-forge
libcxx 16.0.6 hd57cbcb_0 conda-forge
libdeflate 1.18 hac1461d_0 conda-forge
libedit 3.1.20191231 h0678c8f_2 conda-forge
libev 4.33 haf1e3a3_1 conda-forge
libexpat 2.5.0 hf0c8a7f_1 conda-forge
libffi 3.4.2 h0d85af4_5 conda-forge
libframel 8.42.3 h10d778d_0 conda-forge
libgfortran 5.0.0 13_2_0_h97931a8_1 conda-forge
libgfortran5 13.2.0 h2873a65_1 conda-forge
libiconv 1.17 hac89ed1_0 conda-forge
libjpeg-turbo 2.1.5.1 h0dc2134_1 conda-forge
liblal 7.1.7 fftw_h292f3b3_100 conda-forge
liblalburst 1.5.12 h12663b2_0 conda-forge
liblalframe 2.0.0 hac89ed1_1 conda-forge
liblalinference 3.0.3 h9a09a7d_0 conda-forge
liblalinspiral 2.0.6 h12663b2_0 conda-forge
liblalmetaio 2.1.2 hac89ed1_1 conda-forge
liblalpulsar 4.0.0 h45b5eec_2 conda-forge
liblalsimulation 3.1.2 h289410f_1 conda-forge
liblapack 3.9.0 19_osx64_openblas conda-forge
libllvm14 14.0.6 h5b596cc_1 conda-forge
libllvm9 9.0.1 default_h2671707_7 conda-forge
libmetaio 8.5.1 ha978bb4_1002 conda-forge
libnghttp2 1.52.0 he2ab024_0 conda-forge
libopenblas 0.3.24 openmp_h48a4ad5_0 conda-forge
libpng 1.6.39 ha978bb4_0 conda-forge
libsqlite 3.43.2 h92b6c6a_0 conda-forge
libssh2 1.11.0 hd019ec5_0 conda-forge
libtiff 4.5.0 hedf67fa_6 conda-forge
libuv 1.46.0 h0c2f820_0 conda-forge
libwebp-base 1.3.2 h0dc2134_0 conda-forge
libxcb 1.15 hb7f2c08_0 conda-forge
libzlib 1.2.13 h8a1eda9_5 conda-forge
ligo-segments 1.4.0 py310h6729b98_5 conda-forge
ligotimegps 2.0.1 py_0 conda-forge
llvm-openmp 17.0.3 hb6ac08f_0 conda-forge
llvm-tools 14.0.6 h5b596cc_1 conda-forge
lz4-c 1.9.4 hcec6c5f_0
lzo 2.10 haf1e3a3_2
make 4.3 h22f3db7_1 conda-forge
matplotlib 3.8.0 py310h2ec42d9_2 conda-forge
matplotlib-base 3.8.0 py310hb47e01b_0
metaio 8.5.1 hb7f2c08_1002 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
ncurses 6.4 hf0c8a7f_0 conda-forge
numexpr 2.8.7 py310hf6dca73_0
numpy 1.24.2 py310h788a5b3_0 conda-forge
openjpeg 2.5.0 h13ac156_2 conda-forge
openssl 3.1.4 hd75f5a5_0 conda-forge
packaging 23.2 pyhd8ed1ab_0 conda-forge
pandas 2.0.0 py310hecf8f37_0 conda-forge
pcre2 10.40 h1c4e4bc_0 conda-forge
pillow 9.5.0 py310hd63a8c7_1 conda-forge
pip 23.3.1 pyhd8ed1ab_0 conda-forge
pkg-config 0.29.2 ha3d46e9_1008 conda-forge
platformdirs 3.11.0 pyhd8ed1ab_0 conda-forge
pooch 1.8.0 pyhd8ed1ab_0 conda-forge
pthread-stubs 0.4 hc929b4f_1001 conda-forge
py-cpuinfo 9.0.0 py310hecd8cb5_0
pybind11-abi 4 hd8ed1ab_3 conda-forge
pycparser 2.21 pyhd3eb1b0_0
pyerfa 2.0.0 py310hca72f7f_0
pyjwt 2.4.0 py310hecd8cb5_0
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.8.0 py310h0b11676_3
python 3.10.13 h00d2728_0_cpython conda-forge
python-clang 14.0.6 default_hccd1708_1 conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-htcondor 10.6.0 py310h5080afc_0 conda-forge
python-tzdata 2023.3 pyhd8ed1ab_0 conda-forge
python_abi 3.10 4_cp310 conda-forge
pytz 2023.3.post1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0.1 py310h6c40b1e_0
rapidjson 1.1.0 hb1e8313_1002 conda-forge
readline 8.2 h9e318b2_1 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
rhash 1.4.3 h0dc2134_2 conda-forge
safe-netrc 1.0.0 py_0 conda-forge
scipy 1.11.3 py310h2db466d_1 conda-forge
scitokens 1.7.4 pyhd8ed1ab_0 conda-forge
scitokens-cpp 0.7.2 h665ca0d_0 conda-forge
setuptools 68.2.2 pyhd8ed1ab_0 conda-forge
sigtool 0.1.3 h88f4db0_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
tapi 1100.0.11 h9ce4665_0 conda-forge
tk 8.6.13 hef22860_0 conda-forge
tornado 6.3.3 py310h6729b98_1 conda-forge
tqdm 4.65.0 py310h20db666_0
typing-extensions 4.8.0 hd8ed1ab_0 conda-forge
typing_extensions 4.8.0 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
unicodedata2 15.1.0 py310h6729b98_0 conda-forge
urllib3 2.0.7 pyhd8ed1ab_0 conda-forge
wheel 0.41.3 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.11 h0dc2134_0 conda-forge
xorg-libxdmcp 1.1.3 h35c211d_0 conda-forge
xz 5.2.6 h775f41a_0 conda-forge
yaml 0.2.5 haf1e3a3_0
zlib 1.2.13 h8a1eda9_5 conda-forge
zlib-ng 2.0.7 h6c40b1e_0
zstd 1.5.5 h829000d_0 conda-forge
Here is the (now working) environment.
Ah ok I ran into the same issue on the clusters when i installed gwpy after installing scipy.
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
alsa-lib 1.2.8 h166bdaf_0 conda-forge
astropy 5.3.4 py310h1f7b6fc_2 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
autodiff 1.0.3 py310h64a2142_1 conda-forge
bayeswavecpp-bindings 0.0.dev0 dev_0 <develop>
binutils 2.40 hdd6e379_0 conda-forge
binutils_impl_linux-64 2.40 hf600244_0 conda-forge
binutils_linux-64 2.40 hbdbef99_2 conda-forge
blosc 1.21.5 h0f2a231_0 conda-forge
boost 1.78.0 py310hcb52e73_5 conda-forge
boost-cpp 1.78.0 h6582d0a_3 conda-forge
brotli 1.1.0 hd590300_1 conda-forge
brotli-bin 1.1.0 hd590300_1 conda-forge
brotli-python 1.1.0 py310hc6cd4ac_1 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.20.1 hd590300_1 conda-forge
c-blosc2 2.10.5 hb4ffafa_0 conda-forge
c-compiler 1.6.0 hd590300_0 conda-forge
ca-certificates 2023.7.22 hbcca054_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.16.0 hbbf8b49_1016 conda-forge
catch2 3.4.0 h00ab1b0_0 conda-forge
certifi 2023.7.22 pyhd8ed1ab_0 conda-forge
cffi 1.16.0 py310h2fee648_0 conda-forge
charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
clang 16.0.6 ha0738ec_1 conda-forge
clang-16 16.0.6 default_h1cdf331_1 conda-forge
clang-format 16.0.6 default_h1cdf331_1 conda-forge
clang-format-16 16.0.6 default_h1cdf331_1 conda-forge
clang-tools 16.0.6 default_h1cdf331_1 conda-forge
cmake 3.26.4 hcfe8598_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
contourpy 1.1.1 py310hd41b1e2_1 conda-forge
cppyy 3.0.0 pypi_0 pypi
cppyy-backend 1.14.11 pypi_0 pypi
cppyy-cling 6.28.0 pypi_0 pypi
cpycppyy 1.12.13 pypi_0 pypi
cryptography 41.0.5 py310h75e40e8_0 conda-forge
cxx-compiler 1.6.0 h00ab1b0_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
dqsegdb2 1.2.1 pyhd8ed1ab_0 conda-forge
eigen 3.4.0 h00ab1b0_0 conda-forge
exceptiongroup 1.1.3 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
ezdag 0.2.0 pyhd8ed1ab_0 conda-forge
fftw 3.3.10 nompi_hc118613_108 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.43.1 py310h2372a71_0 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
gcc 12.3.0 h8d2909c_2 conda-forge
gcc_impl_linux-64 12.3.0 he2b93b0_2 conda-forge
gcc_linux-64 12.3.0 h76fc315_2 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
glib 2.78.0 hfc55251_0 conda-forge
glib-tools 2.78.0 hfc55251_0 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
gsl 2.7 he838d99_0 conda-forge
gsoap 2.8.123 h8dc497d_0 conda-forge
gst-plugins-base 1.22.3 h938bd60_1 conda-forge
gstreamer 1.22.3 h977cf35_1 conda-forge
gwdatafind 1.1.3 pyhd8ed1ab_0 conda-forge
gwosc 0.7.1 pyhd8ed1ab_0 conda-forge
gwpy 3.0.7 pyhd8ed1ab_0 conda-forge
gxx 12.3.0 h8d2909c_2 conda-forge
gxx_impl_linux-64 12.3.0 he2b93b0_2 conda-forge
gxx_linux-64 12.3.0 h8a814eb_2 conda-forge
h5py 3.9.0 nompi_py310hcca72df_101 conda-forge
harfbuzz 7.3.0 hdb3a94d_0 conda-forge
hdf5 1.14.1 nompi_h4f84152_100 conda-forge
htcondor-classads 10.6.0 he155508_0 conda-forge
icu 72.1 hcb278e6_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
igwn-auth-utils 1.1.0 pyhd8ed1ab_0 conda-forge
importlib-metadata 6.8.0 pyha770c72_0 conda-forge
iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_16 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.5 py310hd41b1e2_1 conda-forge
krb5 1.20.1 h81ceb04_0 conda-forge
lalinference-data 4.1.3 ha770c72_1 conda-forge
lalsimulation-data 5.2.1 ha770c72_1 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.15 h7f713cb_2 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
ldas-tools-al 2.6.7 h59595ed_5 conda-forge
ldas-tools-framecpp 2.9.2 hb003108_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libaec 1.1.2 h59595ed_1 conda-forge
libblas 3.9.0 19_linux64_openblas conda-forge
libbrotlicommon 1.1.0 hd590300_1 conda-forge
libbrotlidec 1.1.0 hd590300_1 conda-forge
libbrotlienc 1.1.0 hd590300_1 conda-forge
libcap 2.69 h0f662aa_0 conda-forge
libcblas 3.9.0 19_linux64_openblas conda-forge
libclang 16.0.6 default_h1cdf331_1 conda-forge
libclang-cpp16 16.0.6 default_h1cdf331_1 conda-forge
libclang13 16.0.6 default_h4d60ac6_1 conda-forge
libcondor_utils 10.6.0 hd75029c_0 conda-forge
libcups 2.3.3 h36d4200_3 conda-forge
libcurl 8.1.2 h409715c_0 conda-forge
libdeflate 1.19 hd590300_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.12 hf998b51_1 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
libframel 8.42.3 hd590300_0 conda-forge
libgcc-devel_linux-64 12.3.0 h8bca6fd_2 conda-forge
libgcc-ng 13.2.0 h807b86a_2 conda-forge
libgcrypt 1.10.1 h166bdaf_0 conda-forge
libgfortran-ng 13.2.0 h69a702a_2 conda-forge
libgfortran5 13.2.0 ha4646dd_2 conda-forge
libglib 2.78.0 hebfc3b9_0 conda-forge
libgomp 13.2.0 h807b86a_2 conda-forge
libgpg-error 1.47 h71f35ed_0 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libjpeg-turbo 2.1.5.1 hd590300_1 conda-forge
liblal 7.3.1 fftw_h648628b_101 conda-forge
liblalburst 2.0.1 hc5c143e_0 conda-forge
liblalframe 3.0.1 h0b41bf4_0 conda-forge
liblalinference 4.1.3 h0c602a9_1 conda-forge
liblalinspiral 4.0.2 h0c602a9_0 conda-forge
liblalmetaio 4.0.1 h0b41bf4_0 conda-forge
liblalsimulation 5.2.1 py310h63a0205_1 conda-forge
liblapack 3.9.0 19_linux64_openblas conda-forge
libllvm16 16.0.6 h5cf9203_2 conda-forge
libllvm9 9.0.1 default_hc23dcda_7 conda-forge
libmetaio 8.5.1 h753d276_1002 conda-forge
libnghttp2 1.55.1 h47da74e_0 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.24 pthreads_h413a1c8_0 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libpq 15.3 hbcd7760_1 conda-forge
libsanitizer 12.3.0 h0f45ef3_2 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsqlite 3.43.2 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-devel_linux-64 12.3.0 h8bca6fd_2 conda-forge
libstdcxx-ng 13.2.0 h7e041cc_2 conda-forge
libsystemd0 254 h3516f8a_0 conda-forge
libtiff 4.6.0 h29866fb_1 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libuv 1.46.0 hd590300_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.3.2 hd590300_0 conda-forge
libxcb 1.15 h0b41bf4_0 conda-forge
libxkbcommon 1.6.0 h5d7e998_0 conda-forge
libxml2 2.11.5 h0d562d8_0 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
ligo-segments 1.4.0 py310h2372a71_5 conda-forge
ligotimegps 2.0.1 py_0 conda-forge
llvm-openmp 17.0.3 h4dfa4b3_0 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
lzo 2.10 h516909a_1000 conda-forge
make 4.3 hd18ef5c_1 conda-forge
matplotlib 3.8.0 py310hff52083_2 conda-forge
matplotlib-base 3.8.0 py310h62c0568_2 conda-forge
mpg123 1.32.3 h59595ed_0 conda-forge
munge 0.5.13 h1c5bbd1_1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.33 hf1915f5_5 conda-forge
mysql-libs 8.0.33 hca2cd23_5 conda-forge
ncurses 6.4 h59595ed_2 conda-forge
nomkl 1.0 h5ca1d4c_0 conda-forge
nspr 4.35 h27087fc_0 conda-forge
nss 3.94 h1d7d5a4_0 conda-forge
numexpr 2.8.7 py310hc2d3c2e_104 conda-forge
numpy 1.26.0 py310hb13e2d6_0 conda-forge
openjpeg 2.5.0 h488ebb8_3 conda-forge
openssl 3.1.4 hd590300_0 conda-forge
packaging 23.2 pyhd8ed1ab_0 conda-forge
pandas 2.1.2 py310hcc13569_0 conda-forge
pcre2 10.40 hc3806b6_0 conda-forge
pillow 10.0.1 py310h29da1c1_1 conda-forge
pip 23.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.42.2 h59595ed_0 conda-forge
pkg-config 0.29.2 h36c2ea0_1008 conda-forge
pluggy 1.3.0 pyhd8ed1ab_0 conda-forge
ply 3.11 py_1 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
pulseaudio-client 16.1 hb77b528_5 conda-forge
py-cpuinfo 9.0.0 pyhd8ed1ab_0 conda-forge
pybind11-abi 4 hd8ed1ab_3 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyerfa 2.0.1.1 py310h1f7b6fc_0 conda-forge
pyjwt 2.8.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
pyqt 5.15.9 py310h04931ad_5 conda-forge
pyqt5-sip 12.12.2 py310hc6cd4ac_5 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.8.0 py310ha028ce3_2 conda-forge
pytest 7.4.3 pyhd8ed1ab_0 conda-forge
python 3.10.13 hd12c33a_0_cpython conda-forge
python-clang 16.0.6 default_hccd1708_1 conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-htcondor 10.6.0 py310h96428ee_0 conda-forge
python-tzdata 2023.3 pyhd8ed1ab_0 conda-forge
python_abi 3.10 4_cp310 conda-forge
pytz 2023.3.post1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0.1 py310h2372a71_1 conda-forge
qt-main 5.15.8 h01ceb2d_12 conda-forge
rapidjson 1.1.0 he1b5a44_1002 conda-forge
readline 8.2 h8228510_1 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
rhash 1.4.3 hd590300_2 conda-forge
safe-netrc 1.0.0 py_0 conda-forge
scipy 1.11.3 py310hb13e2d6_1 conda-forge
scitokens 1.7.4 pyhd8ed1ab_0 conda-forge
scitokens-cpp 0.7.3 haea88ab_0 conda-forge
setuptools 68.2.2 pyhd8ed1ab_0 conda-forge
sip 6.7.12 py310hc6cd4ac_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snappy 1.1.10 h9fff704_0 conda-forge
sysroot_linux-64 2.12 he073ed8_16 conda-forge
tk 8.6.13 h2797004_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.3.3 py310h2372a71_1 conda-forge
tqdm 4.66.1 pyhd8ed1ab_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
unicodedata2 15.1.0 py310h2372a71_0 conda-forge
urllib3 2.0.7 pyhd8ed1ab_0 conda-forge
voms 2.1.0rc3 h25bd2b9_0 conda-forge
wheel 0.41.3 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 hd590300_1 conda-forge
xcb-util-image 0.4.0 h8ee46fc_1 conda-forge
xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge
xcb-util-renderutil 0.3.9 hd590300_1 conda-forge
xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge
xkeyboard-config 2.40 hd590300_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.1.1 hd590300_0 conda-forge
xorg-libsm 1.2.4 h7391055_0 conda-forge
xorg-libx11 1.8.7 h8ee46fc_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxrender 0.9.11 hd590300_0 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
zipp 3.17.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 hd590300_5 conda-forge
zlib-ng 2.0.7 h0b41bf4_0 conda-forge
zstd 1.5.5 hfc55251_0 conda-forge
here is the environment and yes it does seem to be a scipy issue.
(bw_cpp_env_103123) [sophie.hourihane@ldas-pcdev1 draw_from_prior_test_110223]$ python3 -c "from scipy import signal"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/__init__.py", line 189, in __getattr__
return _importlib.import_module(f'scipy.{name}')
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/signal/__init__.py", line 324, in <module>
from ._bsplines import *
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/signal/_bsplines.py", line 12, in <module>
from scipy.interpolate import BSpline
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/interpolate/__init__.py", line 167, in <module>
from ._interpolate import *
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/interpolate/_interpolate.py", line 12, in <module>
from . import _fitpack_py
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/interpolate/_fitpack_py.py", line 10, in <module>
from ._bsplines import BSpline
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/interpolate/_bsplines.py", line 9, in <module>
from scipy.optimize import minimize_scalar
File "/home/sophie.hourihane/.conda/envs/bw_cpp_env_103123/lib/python3.10/site-packages/scipy/optimize/__init__.py", line 411, in <module>
from ._root import *
ModuleNotFoundError: No module named 'scipy.optimize._root'
Ah now I am confused because it looks like the same version of scipy and gwpy between the working env on my computer and the broken env on the cluster..