This is not an issue

[wiildsoul]

Can you please let me know how to run it Properly . And configure the dataset properly. I am new to this field ... HELP WILL BE APPRECIATED

Thank You Very Much

[guopengf]

Hi, I just upload the conda environment to this repo. Basically, you can run the code by following steps:

1. Clone this repo to your local computer

git clone https://github.com/guopengf/FL-MRCM.git

2. Set up conda environment ( for installing conda )

cd FL-MRCM conda env create -f conda_environment.yml conda activate recon

3. Follow the instruction in README to download the preprocessed data via OneDrive or BaiduYun.

4. Correct the dataset path

In main_fl_mr.py Line 23-26, change the path to where you save the datasets. Since HPKS dataset currently is not released, you may remove 'H' dataset for now.

5. Run the code

python main_fl_mr.py --phase train --dataset mri --model unet --epochs 50 --challenge singlecoil --local_bs 16 --num_users 3 --local_ep 2 --train_dataset BFI --test_dataset B --sequence T1 --accelerations 4 --center-fractions 0.08 --val_sample_rate 1.0 --save_dir 'Dir path for saving checkpoints' --verbose

replace the 'Dir path for saving checkpoints' to your exp folder

6. Monitor the traning process

tensorboard --logdir 'Dir path for saving checkpoints'

Hopefully, this can help you get started.

[wiildsoul]

THANK YOU

AND WILL COMMENT HERE IF THERE ARE ANY ISSUES