FA-nf
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Update load_kegg_KAAS.pl to fit to new format of http://rest.kegg.jp/list/genome
Hi, Thanks for the pipeline!!
I think that KEGG annotation results are not being properly loaded in the database. I observed that the record at the rest.kegg page is no longer
genome:T00006 mpn, MYCPN, 272634; Mycoplasma pneumoniae M129
genome:T00007 eco, ECOLI, 511145; Escherichia coli K-12 MG1655
but now
gn:T00006 mpn; Mycoplasma pneumoniae M129
gn:T00007 eco; Escherichia coli K-12 MG1655
I do not think that the script is parsing it correctly anymore and no taxonomy Id is provided by KEGG.
Cheers, Lucas