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Update load_kegg_KAAS.pl to fit to new format of http://rest.kegg.jp/list/genome

Open LucasMS opened this issue 3 years ago • 8 comments

Hi, Thanks for the pipeline!!

I think that KEGG annotation results are not being properly loaded in the database. I observed that the record at the rest.kegg page is no longer

genome:T00006	mpn, MYCPN, 272634; Mycoplasma pneumoniae M129
genome:T00007	eco, ECOLI, 511145; Escherichia coli K-12 MG1655

but now

gn:T00006	mpn; Mycoplasma pneumoniae M129
gn:T00007	eco; Escherichia coli K-12 MG1655

I do not think that the script is parsing it correctly anymore and no taxonomy Id is provided by KEGG.

Cheers, Lucas

LucasMS avatar Dec 22 '21 13:12 LucasMS