gubrins
gubrins
Heys! I'm working with whole-genome sequencing of a non-model organism and I was checking the quality of the data with FastQC. As I found that my per tile sequence quality...
Heys, I am doing the SNP calling with Haplotypecaller BP_Resolution, CombineGVCFs with convert-to-base-pair-resolution and GenotypeGVCFs with include-non-variant-sites with GATK v.4.1.7.0 and when I get my vcf file, the non-variant sites...
Heys, I get an error message when running this code: `utils/psmc_plot.pl diploid diploid.psmc` > Can't find PostScript prologue file prologue.ps loadpath is empty gnuplotrc is read from /anaconda/envs/_build/share/gnuplot/5.0 Please copy...
Heys, I am having problems when trying to calculate coverage levels of a bed file with genomeCoverageBed (v2.3), as my bam and bed files are sorted differently: cut -f 1...
### Checklist - [X] I added a descriptive title - [X] I searched open reports and couldn't find a duplicate ### What happened? Heys, I am trying to install a...
**Are you using the latest release?** Yes, funannotate v1.8.16. **Describe the bug** I am trying to run funannotate with the test dataset and it does not work. **What command did...
Heys, I am working with two closely related species and for both I have HiFi and Hi-C data. I did the exact same for both species and for species 1,...
Heys, I'm using Dsuite to investigate if there was introgression in my dataset and I'm experiencing different results depending on the filtering settings (mainly in the amount of missing data...
Heys, I'm doing some introgression analyses and I have a crucial question. I have several individuals per species, having a total of three species plus the outgroup and I am...