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[E] parallel loop failed in HandleContext

Open bitcometz opened this issue 6 years ago • 0 comments

Hello,

I run daccordcontig and got some error information:

[E] tid=24 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=26 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=27 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=19 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=13 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=29 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=25 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=28 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=15 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ...... [E] tid=8 [E] aread=6 bread=1782107: [16116800,16116843) [58230,58251) e=22 expected 21 ......

Then the log file ends with: ...... my_path/libmaus2-2.0.562-release-20181129235231/lib/libmaus2.so.2(libmaus2::util::StackTrace::StackTra daccordcontig(libmaus2::exception::LibMausException::LibMausException()+0x20)[0x438c20] daccordcontig(libmaus2::dazzler::align::Overlap::computeTrace(unsigned char const*, unsigned char const*, long, libmaus2::lcs::Alignmen daccordcontig()[0x42dce3] /lib64/libgomp.so.1(+0x163c5)[0x2b4752b653c5] /lib64/libpthread.so.0(+0x7dc5)[0x2b4752f92dc5] /lib64/libc.so.6(clone+0x6d)[0x2b475329e76d]

[V] aread 6 windows finished 2119424/2119440 [V] aread 6 windows finished 2119430/2119440 [E] parallel loop failed in HandleContext

my_path/libmaus2-2.0.562-release-20181129235231/lib/libmaus2.so.2(libmaus2::util::StackTrace::StackTra daccordcontig(libmaus2::exception::LibMausException::LibMausException()+0x20)[0x438c20] daccordcontig(HandleContext::operator()(std::ostream&, std::ostream&, std::string const&, libmaus2::dazzler::align::BinIndexDecoder con daccordcontig(daccordcontig(libmaus2::util::ArgParser const&)+0x18a8)[0x430a18] daccordcontig(main+0x146b)[0x42842b] /lib64/libc.so.6(__libc_start_main+0xf5)[0x2b47531c8b35] daccordcontig()[0x428def]

Could you help me with this problem? Thanks!

bitcometz avatar Dec 25 '18 08:12 bitcometz