German Tischler

Hi, the lower case sq is most likely an artefact introduced by github. The error line reported here is only triggered if the BAM header has different length values in...

Hi, could you post the complete SAM header? Thanks

Hi, you have sequence 8 appearing twice in your SAM header. biobambam2 should provide a more sensible error message for such cases, but it's definitely a broken input file. ```...

Yes, but it may take some time.

Hi, I have not run any ONT data through daccord recently. I hope I'll find the time to do so soon. Best

As the README.md says, you need to first convert your input FastA file(s) to a dazzler database using fasta2DB or fasta2DAM from DAZZ_DB . Use something like fasta2DAM reads.dam reads.fasta...

Yes, you need DAZZ_DB and DALIGNER.

Yes. Each of the LAS files contains alignments for a block of reads. daccord will output corrected reads for the reads it finds in these files.

The program should be just fine with it's default settings. If you are looking at a repetitive genome, you may consider setting the -D parameter to twice the average sequencing...

Is there any particular detail you're intersted in? Any particular issues with understanding the paper?